Set the :shallow_path as each scope is generated

If we set :shallow_path when shallow is called it can result in incorrect
paths if the resource is inside a namespace because namespace itself sets
the :shallow_path option to the namespace path.

We fix this by removing the :shallow_path option from shallow as that should
only be turning shallow routes on and not otherwise affecting the scope.
To do this we need to treat the :shallow option to resources differently to
other scope options and move it to before the nested block is called.

This change also has the positive side effect of making the behavior of the
:shallow option consistent with the shallow method.

Fixes #12498.

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